Sequence information for Ca_00040
| General information | |
| Accession | Ca_00040 |
| Type | TCP |
| Name | transcription factor tcp8-like |
| Chromosome | Ca1 |
| Strand | ( - ) |
| Location on chromosome | 388921-390483 |
| Download Fasta | |
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| Gene Sequence (CDS) | |
| Gene Length | 1563 bp |
| Tools Blast
| ATGGAACTATCAGATTTGCAAAACAACAAGCAGAAGAGAGGCACCCACCAACAACAACAACAAGAATCATCTTCTTCTCCTTCAAATTCTCATTCTCATTCTCATTCTCATTCTCATCAACAACACCTTGTGGTCCCTTTTGATGGAAGACCACCCCCTTTCATTATGGGCTCCATCTCCATCCAACAACCTTCTTCAAACTCTTCTTCTTCTTCTTCCTCCAATTCTTCATCTTCTGCCATTGACGCTTCTCTCGCCATCGCCACCAGATCTGAACCTCCACTCCTCAATAACACAAATAACCAATTATCCTCCTCCTCTCCCGCCGTCACCACCGTCGCCAATCCTCCTAAACGATCCACCAAAGACAGACACACCAAAGTCGACGGCCGCGGCCGTAGAATTCGAATGCCGGCGACATGTGCTGCCAGGGTTTTTCAGTTGACCAGAGAATTAGGCCACAAATCCGACGGCGAAACAATCGAGTGGCTTCTCCAGCAAGCAGAACCAGCGATCATCGCCGCCACTGGCACCGGAACGATCCCAGCTAATTTCTCCACTCTGAACGTCTCACTCAGAAGCAGTGGCTCCACGCTGTCGGCTCCGCCGTCGAAATCGGCTCCTCACAGTTTTCACGGCGCGCTTGCACTGACTCGTCATCCTTACGAGGAAGCCGCGTACCAACACGCGCCTCTTCTAGGGTTTCATCAACACCACCAACAACTGATGAGTGCTGATCAAATCGGTGAAGCTTTAAATCCAAACGAGAATTACATGAGGAAACGTTATAGAGAAGATCTTTTCAAAGACGATAATAACAACAACGAAAGTGGTGGTGATGGTTCTTCTTCTTCTCCAAAAGCTTTCAAAACAAATCATCAACAACAAGATACTATGGGTGAAGGTGAAGGTGGAGGCGGCGGCGGCGGTGGTGGTGGTAGTGGAGCTTCTTCTTCATCTTCTTCTAATAGTTCAATTTCTGGACTTCTTCGACCGTCGAATATGATACCGGCGACAGCCATGTGGGCCACAGCGGGTAGTGGAAACACAATTTGGATGGTACCGGTGAGTGGCGGCGGTGGTGGTGCTGCAACTTCGAATTCAGAGACACAAACACAGAACATGTGGCCTTTTGGTCCTTCTCCATCTCAAAATAGTCAAACTCAAGGGAACAACGCCGGAACTCCGTCTCCGTTACATTTTATGCCGAGGTTTAATCTTCCGGTATCAGGTGGTGGTGGTGGTGGTGGTGTTGAGTTTCAGGGTGGACGTGGTGGTTTACAATTGGGTTCAGTGTATCAACCTTCACAGCATATTGGATTGGCAGTTTCTGATTCAAATTTGGGTATGTTGGCTGCTCTTAATGCTTACACAAGAGCTGCAGCTGGTGCTACTGATTTCAATGTTAATGTTAATTCTGATAATCATCATCACCATCACCATCAACATCAACATCAACATCATTCTATTTCATTGGATTCACAATCTCATTCTCATTCTCATTCTCATTCTCATCCTCAACCTACTGAAAGTGAAGAAGATGCTCCTGATACCTCTCAATGA |
| Genomic Sequence | |
| Tools Alternative splicing |
TCATTGAGAGGTATCAGGAGCATCTTCTTCACTTTCAGTAGGTTGAGGATGAGAATGAGAATGAGAATGAGAATGAGATTGTGAATCCAATGAAATAGAATGATGTTGATGTTGATGTTGATGGTGATGGTGATGATGATTATCAGAATTAACATTAACATTGAAATCAGTAGCACCAGCTGCAGCTCTTGTGTAAGCATTAAGAGCAGCCAACATACCCAAATTTGAATCAGAAACTGCCAATCCAATATGCTGTGAAGGTTGATACACTGAACCCAATTGTAAACCACCACGTCCACCCTGAAACTCAACACCACCACCACCACCACCACCTGATACCGGAAGATTAAACCTCGGCATAAAATGTAACGGAGACGGAGTTCCGGCGTTGTTCCCTTGAGTTTGACTATTTTGAGATGGAGAAGGACCAAAAGGCCACATGTTCTGTGTTTGTGTCTCTGAATTCGAAGTTGCAGCACCACCACCGCCGCCACTCACCGGTACCATCCAAATTGTGTTTCCACTACCCGCTGTGGCCCACATGGCTGTCGCCGGTATCATATTCGACGGTCGAAGAAGTCCAGAAATTGAACTATTAGAAGAAGATGAAGAAGAAGCTCCACTACCACCACCACCGCCGCCGCCGCCTCCACCTTCACCTTCACCCATAGTATCTTGTTGTTGATGATTTGTTTTGAAAGCTTTTGGAGAAGAAGAAGAACCATCACCACCACTTTCGTTGTTGTTATTATCGTCTTTGAAAAGATCTTCTCTATAACGTTTCCTCATGTAATTCTCGTTTGGATTTAAAGCTTCACCGATTTGATCAGCACTCATCAGTTGTTGGTGGTGTTGATGAAACCCTAGAAGAGGCGCGTGTTGGTACGCGGCTTCCTCGTAAGGATGACGAGTCAGTGCAAGCGCGCCGTGAAAACTGTGAGGAGCCGATTTCGACGGCGGAGCCGACAGCGTGGAGCCACTGCTTCTGAGTGAGACGTTCAGAGTGGAGAAATTAGCTGGGATCGTTCCGGTGCCAGTGGCGGCGATGATCGCTGGTTCTGCTTGCTGGAGAAGCCACTCGATTGTTTCGCCGTCGGATTTGTGGCCTAATTCTCTGGTCAACTGAAAAACCCTGGCAGCACATGTCGCCGGCATTCGAATTCTACGGCCGCGGCCGTCGACTTTGGTGTGTCTGTCTTTGGTGGATCGTTTAGGAGGATTGGCGACGGTGGTGACGGCGGGAGAGGAGGAGGATAATTGGTTATTTGTGTTATTGAGGAGTGGAGGTTCAGATCTGGTGGCGATGGCGAGAGAAGCGTCAATGGCAGAAGATGAAGAATTGGAGGAAGAAGAAGAAGAAGAGTTTGAAGAAGGTTGTTGGATGGAGATGGAGCCCATAATGAAAGGGGGTGGTCTTCCATCAAAAGGGACCACAAGGTGTTGTTGATGAGAATGAGAATGAGAATGAGAATGAGAATTTGAAGGAGAAGAAGATGATTCTTGTTGTTGTTGTTGGTGGGTGCCTCTCTTCTGCTTGTTGTTTTGCAAATCTGATAGTTCCAT |
| Protein Sequence | |
| Amino acid Length | 520 aa |
| Tools Domain Analysis Disorder Structure MELSDLQNNKQKRGTHQQQQQESSSSPSNSHSHSHSHSHQQHLVVPFDGRPPPFIMGSISIQQPSSNSSSSSSSNSSSSAIDASLAIATRSEPPLLNNTNNQLSSSSPAVTTVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALTRHPYEEAAYQHAPLLGFHQHHQQLMSADQIGEALNPNENYMRKRYREDLFKDDNNNNESGGDGSSSSPKAFKTNHQQQDTMGEGEGGGGGGGGGGSGASSSSSSNSSISGLLRPSNMIPATAMWATAGSGNTIWMVPVSGGGGGAATSNSETQTQNMWPFGPSPSQNSQTQGNNAGTPSPLHFMPRFNLPVSGGGGGGGVEFQGGRGGLQLGSVYQPSQHIGLAVSDSNLGMLAALNAYTRAAAGATDFNVNVNSDNHHHHHHQHQHQHHSISLDSQSHSHSHSHSHPQPTESEEDAPDTSQ | |
| Promoter Sequence (1.5 kb) | |
| Tools Motif Search | TTGTGGGGAAGCCTACTTGCTTACTTCAACCTTTTTTTTTATATATATAAAAAAATATAATTTATATTTGAATTTCTGGGGTATATCATATCATAGATGATTCATGGGTGTGTTGTTTTTCAACACTAACTCCAACGATAGCTCTAACTCTAACTCAAATTCAGTCATGCCAATTAGACAGAGAAAACAAAGTGGGGTGGGGTGGGGGCGCGGGTTAGAGAGAGAGAGAGAGACAGAAAGGCACAGACACACACACAAAGAACAAAGATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTAAAATTTGAAAGGGTGTGTTGGAATGGAGTGGACCAAAATGAGTGAGAGTTAGTGGGGTTGTGATTGACTGTTGTCTTGCTTGCTCGGTTATGTGAGAATGAGTGGGGACCGTAGTTAGTACTGTAGGAGTATTAGTAAGTGAAAAAAACGTAACAGAAGACCACTCGTGGGGTCTCGTAAAAGGAATTCCAAATATTGCCCTTTCTTACTCTCTCTCTCTCTCTCTGTGATTCAAAGTCAAGACTCCAATTTCCTCTCTCCTCCAACTGGCCAACACAAACTAATATACTATAATTTCAAATCTCTTCTTTCATTACAAAATTATAATTATGAGAGATTCAGATTGATTTTATTCAGTGTTAATATAGAGTTTGATAGAAATTATAATGATTGGGCAGTGGGTGGGTGGGTGTTTAAAGTGTATAAATAAACTTCACATTCACATTCACATTCACAATATTGAATTCAATTCCACAGATGAGCAACAGATAAAGGCATCTAATGCAGTATAGCAAGACAGCTCATCCCAACCCAATCCACATTTCTTTTTTCTTTTTTCTTTTTTCTTTTTCTCATGGTCAAATTTCCTTGCCCACTCTACCTTTTCGTTAGTGGAGGATCCACAAACACATAATTCTCCTTGCTCCATGCATATTTCAATTTCAAATCTATTTATTCTATACATCTAATGCAACAACAGAATCACTCGTATATAAAACTAATGGAATTTACGTGACTTTCATCCTACAAAAAGACTGTAAAATTAAAGTGGGTCATGGAAAAATATGTTTCTAATACTTCTAAAATAATTATTTACTGTATAGAAGATTATCAAAAATATCTTTCAAAAAATATTTAATATCTCTATGTATTCATATATTATATATATAAGAAGAAGAAAAATAAATAAATAGTTGTAATTCAAATACTTTTTTAATGGTTTATATGAGTCTCCTCCTCTTCAATTAAATCATTTGTTCAATTCATGTATACAAATATTTTACAAATATTAAACCATGTGCATACCAATTATATGAGTTGCATCAAATGGTGTTTTGTTGAATTCATGTATACCAATATTTCACACTATCAATGCATACCAATTAATATAATTTTGTATTTTGTATTATAACTTGTATTCATATACAAAAGATTAATAGTAGTTCTGATGAAAATTATAACATGATGTATGGCAAG |
| Features | |
| Domains (Pfam) | |
| Motifs (PLACE) | Show Details |
| Predicted Localization (Loctree) | nucleus |
| Gene Ontology | |
| Orthology | |
| PlantTFDB | |
| TAIR | |